It's fixed!

I was reading through your post and I decided to try your suggestion of
assigning the drives to the same channel. Well it did't work but then I but
them back as, one on each channel but opposite of the way they were at first.
Well BIOS did not detect my second HD so I left it and my computer restarted.
I was distracted and I did not touch anything so it booted into Windows. And
to my surprise it found the drive! Even though BIOS did not show it! I have
now put everything back in place and it works great! And it is all thanks to
your suggestion!

Thanks for putting so much effort into the reply!